Browsing University of Waterloo by Supervisor "Ghodsi, Ali"
Now showing items 1-8 of 8
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Advancing Antibody Design: Integrating Protein Language Models for Enhanced Computational Strategies
(University of Waterloo, 2024-01-25)Antibodies, or immunoglobulins, are integral to the immune response, playing a crucial role in recognizing and neutralizing external threats such as pathogens. The design of these molecules, however, is complex due to the ... -
Approaches and Techniques to Enhance Efficiency and Performance of Non-Contrastive Self-Supervised Learning Methods
(University of Waterloo, 2023-03-31)Self-supervised learning (SSL) methods have gained considerable attention in recent years due to their ability to learn useful representations of data without relying on labels during training. These methods have ... -
Automated Knowledge Discovery using Neural Networks
(University of Waterloo, 2021-05-21)The natural world is known to consistently abide by scientific laws that can be expressed concisely in mathematical terms, including differential equations. To understand the patterns that define these scientific laws, it ... -
End-to-End Whole Slide Image Classification and Search using Set Representations
(University of Waterloo, 2022-08-31)Due to the sheer size of gigapixel whole slide images (WSIs), it is difficult to apply deep learning and computer vision algorithms for digital pathology. Traditional approaches rely on extracting meaningful patches from ... -
Exploring New Forms of Random Projections for Prediction and Dimensionality Reduction in Big-Data Regimes
(University of Waterloo, 2018-05-01)The story of this work is dimensionality reduction. Dimensionality reduction is a method that takes as input a point-set P of n points in R^d where d is typically large and attempts to find a lower-dimensional representation ... -
Peptide Sequencing with Deep Learning
(University of Waterloo, 2020-09-30)In shotgun proteomics, de novo peptide sequencing from tandem mass spectrometry data is the key technology for finding new peptide or protein sequences. It has successful applications in assembling monoclonal antibody ... -
Prediction and Planning in Dynamical Systems with Underlying Markov Decision Processes
(University of Waterloo, 2021-08-24)Predicting the future state of a scene with moving objects is a task that humans handle with ease. This is due to our understanding about the dynamics of the objects in the scene and the way they interact. However, teaching ... -
Using Machine Learning Algorithms for Finding the Topics of COVID-19 Open Research Dataset Automatically
(University of Waterloo, 2021-02-26)The COVID-19 Open Research Dataset (CORD-19) is a collection of over 400,000 of scholarly papers (as of January 11th, 2021) about COVID-19, SARS-CoV-2, and related coronaviruses curated by the Allen Institute for AI. ...